PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G195900.1.p
Common NameGLYMA_20G195900, LOC100306125
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 200aa    MW: 22416.5 Da    PI: 8.91
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G195900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.4e-19108159256
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          +y+GVr+++ +g+++AeIrdp++ g   r++lg+f+t+ +Aaka++ a+ +++g+
  Glyma.20G195900.1.p 108 HYRGVRRRP-WGKFAAEIRDPKKKG--SRVWLGTFDTEIDAAKAYDCAAFRMRGH 159
                          7********.**********96643..**********99**************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.3E-32107167IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-22108168IPR016177DNA-binding domain
CDDcd000181.12E-29108166No hitNo description
PfamPF008476.0E-14108159IPR001471AP2/ERF domain
SMARTSM003803.2E-37108172IPR001471AP2/ERF domain
PROSITE profilePS5103224.131108166IPR001471AP2/ERF domain
PRINTSPR003675.8E-13109120IPR001471AP2/ERF domain
PRINTSPR003675.8E-13148168IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:1902074Biological Processresponse to salt
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MATAEEISTL KLLRQYLLGD ISDPFLTNLI PVKLEDPSSG LDMGSNFSEQ SSFCKFLECF  60
DFEAEVVGLT SHHKVQSSIA TSPPQNFNFP EEPMVSMKKE ATCYATRHYR GVRRRPWGKF  120
AAEIRDPKKK GSRVWLGTFD TEIDAAKAYD CAAFRMRGHK AVLNFPLEAG MSHPEPNSSG  180
RKRRREYTTA ATSSRHVMS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-29107167464ATERF1
3gcc_A2e-29107167464ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180184RKRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.559620.0cotyledon| hypocotyl| root| seed coat
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0900810.0BT090081.1 Soybean clone JCVI-FLGm-3H9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001237945.11e-150uncharacterized protein LOC100306125
TrEMBLC6SY341e-150C6SY34_SOYBN; Uncharacterized protein
STRINGGLYMA20G33800.11e-149(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52573056
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.19e-41ERF family protein